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» Complexity, parallel computation and statistical physics
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ESWA
2007
127views more  ESWA 2007»
14 years 9 months ago
Clustering support vector machines for protein local structure prediction
Understanding the sequence-to-structure relationship is a central task in bioinformatics research. Adequate knowledge about this relationship can potentially improve accuracy for ...
Wei Zhong, Jieyue He, Robert W. Harrison, Phang C....
BMCBI
2010
142views more  BMCBI 2010»
14 years 9 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
BMCBI
2007
152views more  BMCBI 2007»
14 years 9 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
CORR
2010
Springer
142views Education» more  CORR 2010»
14 years 8 months ago
HyperANF: Approximating the Neighbourhood Function of Very Large Graphs on a Budget
The neighbourhood function NG(t) of a graph G gives, for each t ∈ N, the number of pairs of nodes x, y such that y is reachable from x in less that t hops. The neighbourhood fun...
Paolo Boldi, Marco Rosa, Sebastiano Vigna
MICRO
2003
IEEE
125views Hardware» more  MICRO 2003»
15 years 2 months ago
WaveScalar
Silicon technology will continue to provide an exponential increase in the availability of raw transistors. Effectively translating this resource into application performance, how...
Steven Swanson, Ken Michelson, Andrew Schwerin, Ma...