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» Complexity Results for Checking Distributed Implementability
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BIOINFORMATICS
2012
13 years 2 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
BMCBI
2005
94views more  BMCBI 2005»
14 years 11 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...
CCGRID
2005
IEEE
15 years 5 months ago
Efficient resource description and high quality selection for virtual grids
Simple resource specification, resource selection, and effective binding are critical capabilities for Grid middleware. We the Virtual Grid, an abstraction for dynamic grid applic...
Yang-Suk Kee, D. Logothetis, Richard Y. Huang, Hen...
BMCBI
2008
124views more  BMCBI 2008»
14 years 11 months ago
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays
Background: Reverse Phase Protein Arrays (RPPA) are convenient assay platforms to investigate the presence of biomarkers in tissue lysates. As with other high-throughput technolog...
Romesh Stanislaus, Mark Carey, Helena F. Deus, Kev...
BMCBI
2006
175views more  BMCBI 2006»
14 years 11 months ago
Parameter estimation for stiff equations of biosystems using radial basis function networks
Background: The modeling of dynamic systems requires estimating kinetic parameters from experimentally measured time-courses. Conventional global optimization methods used for par...
Yoshiya Matsubara, Shinichi Kikuchi, Masahiro Sugi...