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» Complexity of O'Hara's Algorithm
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BMCBI
2002
108views more  BMCBI 2002»
15 years 5 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
PPL
2007
86views more  PPL 2007»
15 years 5 months ago
Failure-Sensitive Analysis of Parallel Algorithms with Controlled Memory Access Concurrency
ract problem of using P failure-prone processors to cooperatively update all locations of an N-element shared array is called Write-All. Solutions to Write-All can be used iterati...
Chryssis Georgiou, Alexander Russell, Alexander A....
TCBB
2010
104views more  TCBB 2010»
15 years 4 months ago
Fast Hinge Detection Algorithms for Flexible Protein Structures
— Analysis of conformational changes is one of the keys to the understanding of protein functions and interactions. For the analysis, we often compare two protein structures, tak...
Tetsuo Shibuya
BMCBI
2010
185views more  BMCBI 2010»
15 years 1 months ago
MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heu
Background: The development, in the last decade, of stochastic heuristics implemented in robust application softwares has made large phylogeny inference a key step in most compara...
Raphaël Helaers, Michel C. Milinkovitch
ICMCS
2005
IEEE
124views Multimedia» more  ICMCS 2005»
15 years 11 months ago
Fast inter frame encoding based on modes pre-decision in H.264
The new video coding standard, H.264 allows motion estimation performing on tree-structured block partitioning and multiple reference frames. This feature improves the prediction ...
Dongming Zhang, Yanfei Shen, Shouxun Lin, Yongdong...