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ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
14 years 10 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...
BMCBI
2010
259views more  BMCBI 2010»
14 years 7 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
112
Voted
BMCBI
2011
14 years 7 months ago
nocoRNAc: Characterization of non-coding RNAs in prokaryotes
Background: The interest in non-coding RNAs (ncRNAs) constantly rose during the past few years because of the wide spectrum of biological processes in which they are involved. Thi...
Alexander Herbig, Kay Nieselt
123
Voted
JMLR
2011
192views more  JMLR 2011»
14 years 7 months ago
Minimum Description Length Penalization for Group and Multi-Task Sparse Learning
We propose a framework MIC (Multiple Inclusion Criterion) for learning sparse models based on the information theoretic Minimum Description Length (MDL) principle. MIC provides an...
Paramveer S. Dhillon, Dean P. Foster, Lyle H. Unga...
SIAMMA
2011
98views more  SIAMMA 2011»
14 years 7 months ago
Time-Periodic Linearized Solutions of the Compressible Euler Equations and a Problem of Small Divisors
It has been unknown since the time of Euler whether or not time-periodic sound wave propagation is physically possible in the compressible Euler equations, due mainly to the ubiqui...
Blake Temple, Robin Young