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» Compositional Memory Systems for Data Intensive Applications
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PLDI
2012
ACM
13 years 3 months ago
Adaptive input-aware compilation for graphics engines
While graphics processing units (GPUs) provide low-cost and efficient platforms for accelerating high performance computations, the tedious process of performance tuning required...
Mehrzad Samadi, Amir Hormati, Mojtaba Mehrara, Jan...
IPPS
2005
IEEE
15 years 6 months ago
A Case Study on Pattern-Based Systems for High Performance Computational Biology
Computational biology research is now faced with the burgeoning number of genome data. The rigorous postprocessing of this data requires an increased role for high performance com...
Weiguo Liu, Bertil Schmidt
HIPC
2009
Springer
14 years 10 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
91
Voted
ASPLOS
2008
ACM
15 years 2 months ago
Concurrency control with data coloring
Concurrency control is one of the main sources of error and complexity in shared memory parallel programming. While there are several techniques to handle concurrency control such...
Luis Ceze, Christoph von Praun, Calin Cascaval, Pa...
86
Voted
DCC
2006
IEEE
16 years 9 days ago
Data Compression with Restricted Parsings
We consider a class of algorithms related to Lempel-Ziv that incorporate restrictions on the manner in which the data can be parsed with the goal of introducing new tradeoffs betwe...
John T. Robinson, Luis Alfonso Lastras-Monta&ntild...