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POPL
2008
ACM
16 years 3 months ago
Engineering formal metatheory
Machine-checked proofs of properties of programming languages have become a critical need, both for increased confidence in large and complex designs and as a foundation for techn...
Arthur Charguéraud, Benjamin C. Pierce, Bri...
POPL
2007
ACM
16 years 3 months ago
Lightweight fusion by fixed point promotion
This paper proposes a lightweight fusion method for general recursive function definitions. Compared with existing proposals, our method has several significant practical features...
Atsushi Ohori, Isao Sasano
RECOMB
2008
Springer
16 years 3 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
RECOMB
2007
Springer
16 years 3 months ago
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
Rohit Singh, Jinbo Xu, Bonnie Berger
RECOMB
2006
Springer
16 years 3 months ago
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
Computational and comparative analysis of protein-protein interaction (PPI) networks enable understanding of the modular organization of the cell through identification of functio...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...