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» Computability of Models for Sequence Assembly
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BMCBI
2007
247views more  BMCBI 2007»
15 years 5 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai
IWRIDL
2006
ACM
141views Education» more  IWRIDL 2006»
15 years 11 months ago
Shallow syntax analysis in Sanskrit guided by semantic nets constraints
We present the state of the art of a computational platform for the analysis of classical Sanskrit. The platform comprises modules for phonology, morphology, segmentation and shal...
Gérard P. Huet
BMCBI
2006
142views more  BMCBI 2006»
15 years 5 months ago
Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with
Background: Common fragile sites (cfs) are specific regions in the human genome that are particularly prone to genomic instability under conditions of replicative stress. Several ...
Angela Re, Davide Corà, Alda Maria Puliti, ...
BMCBI
2007
104views more  BMCBI 2007»
15 years 5 months ago
TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets
Background: The nucleotide sequence flanking the translation initiation codon (start codon context) affects the translational efficiency of eukaryotic mRNAs, and may indicate the ...
Renato Vicentini, Marcelo Menossi
NAR
2006
177views more  NAR 2006»
15 years 5 months ago
PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways
The PUMA2 system (available at http://compbio.mcs. 10 anl.gov/puma2) is an interactive, integrated bioinformatics environment for high-throughput genetic sequence analysis and met...
Natalia Maltsev, Elizabeth M. Glass, Dinanath Sula...