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» Computation of Median Gene Clusters
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IPPS
2006
IEEE
15 years 3 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
COCOON
2005
Springer
15 years 3 months ago
Perfect Sorting by Reversals
In computational biology, gene order data is often modelled as signed permutations. A classical problem in genome comparison is to detect conserved segments in a permutation, that ...
Marie-France Sagot, Eric Tannier
PAMI
2007
202views more  PAMI 2007»
14 years 9 months ago
Weighted Graph Cuts without Eigenvectors A Multilevel Approach
—A variety of clustering algorithms have recently been proposed to handle data that is not linearly separable; spectral clustering and kernel k-means are two of the main methods....
Inderjit S. Dhillon, Yuqiang Guan, Brian Kulis
AIIA
2009
Springer
15 years 4 months ago
Ontology-Driven Co-clustering of Gene Expression Data
Abstract. The huge volume of gene expression data produced by microarrays and other high-throughput techniques has encouraged the development of new computational techniques to eva...
Francesca Cordero, Ruggero G. Pensa, Alessia Visco...
ICCSA
2005
Springer
15 years 3 months ago
A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering
In this paper, we propose a new clustering procedure for high dimensional microarray data. Major difficulty in cluster analysis of microarray data is that the number of samples to ...
Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi