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» Computation of Median Gene Clusters
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BMCBI
2006
129views more  BMCBI 2006»
14 years 9 months ago
Functional clustering of yeast proteins from the protein-protein interaction network
Background: The abundant data available for protein interaction networks have not yet been fully understood. New types of analyses are needed to reveal organizational principles o...
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jerni...
RECOMB
1997
Springer
15 years 1 months ago
Progressive multiple alignment with constraints
A progressive alignment algorithm produces a multi-alignment of a set of sequences by repeatedly aligning pairs of sequences and/or previously generated alignments. We describe a ...
Gene Myers, Sanford Selznick, Zheng Zhang 0004, We...
BMCBI
2010
155views more  BMCBI 2010»
14 years 7 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
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EUROPAR
2009
Springer
15 years 4 months ago
A Multilevel Parallelization Framework for High-Order Stencil Computations
Stencil based computation on structured grids is a common kernel to broad scientific applications. The order of stencils increases with the required precision, and it is a challeng...
Hikmet Dursun, Ken-ichi Nomura, Liu Peng, Richard ...
CAP
2010
14 years 4 months ago
Parallel disk-based computation for large, monolithic binary decision diagrams
Binary Decision Diagrams (BDDs) are widely used in formal verification. They are also widely known for consuming large amounts of memory. For larger problems, a BDD computation wi...
Daniel Kunkle, Vlad Slavici, Gene Cooperman