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» Computation of Median Gene Clusters
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BMCBI
2007
131views more  BMCBI 2007»
14 years 9 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
70
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ISSAC
2007
Springer
107views Mathematics» more  ISSAC 2007»
15 years 3 months ago
A disk-based parallel implementation for direct condensation of large permutation modules
Through the use of a new disk-based method for enumerating very large orbits, condensation for orbits with tens of billions of elements can be performed. The algorithm is novel in...
Eric Robinson, Jürgen Müller 0004, Gene ...
ICAI
2007
14 years 11 months ago
Mining and Dynamic Simulation of Sub-Networks from Large Biomolecular Networks
Biomolecular networks dynamically respond to stimuli and implement cellular function. Understanding these dynamic changes is the key challenge for cell biologists. As biomolecular...
Xiaohua Hu, Fang-Xiang Wu, Michael K. Ng, Bahrad A...
ICML
2008
IEEE
15 years 10 months ago
Expectation-maximization for sparse and non-negative PCA
We study the problem of finding the dominant eigenvector of the sample covariance matrix, under additional constraints on the vector: a cardinality constraint limits the number of...
Christian D. Sigg, Joachim M. Buhmann
IPPS
2008
IEEE
15 years 4 months ago
Parallel mining of closed quasi-cliques
Graph structure can model the relationships among a set of objects. Mining quasi-clique patterns from large dense graph data makes sense with respect to both statistic and applica...
Yuzhou Zhang, Jianyong Wang, Zhiping Zeng, Lizhu Z...