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» Computation of Median Gene Clusters
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CIBCB
2006
IEEE
15 years 3 months ago
Aggregating Homologous Protein Families in Evolutionary Reconstructions of Herpesviruses
Abstract–Protein families can be used to reconstruct evolutionary histories of organisms. The accuracy of protein assignment to such families is critical for the success of such ...
Boris Mirkin, Renata da Silva Camargo, Trevor I. F...
NCA
2006
IEEE
15 years 3 months ago
Parallelization of Geant4 Using TOP-C and Marshalgen
Geant4 is a very large, highly accurate toolkit for Monte Carlo simulation of particle-matter interaction. It has been applied to high-energy physics, cosmic ray modeling, radiati...
Gene Cooperman, Viet Ha Nguyen, Igor Malioutov
83
Voted
SC
2003
ACM
15 years 2 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
SAC
2010
ACM
14 years 8 months ago
Optimal linear projections for enhancing desired data statistics
Problems involving high-dimensional data, such as pattern recognition, image analysis, and gene clustering, often require a preliminary step of dimension reduction before or durin...
Evgenia Rubinshtein, Anuj Srivastava
BMCBI
2008
171views more  BMCBI 2008»
14 years 9 months ago
Fuzzy association rules for biological data analysis: A case study on yeast
Background: Last years' mapping of diverse genomes has generated huge amounts of biological data which are currently dispersed through many databases. Integration of the info...
Francisco J. Lopez, Armando Blanco, Fernando Garci...