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» Computation with finite stochastic chemical reaction network...
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95
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AMC
2006
145views more  AMC 2006»
15 years 15 days ago
Computing the moments of high dimensional solutions of the master equation
Derived from the Markov character only, the master equation of chemical reactions is an accurate stochastic description of quite general systems in chemistry. Exact solutions of t...
Stefan Engblom
BMCBI
2004
323views more  BMCBI 2004»
15 years 9 days ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
124
Voted
AB
2008
Springer
15 years 6 months ago
The Smallest Multistationary Mass-Preserving Chemical Reaction Network
Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the exist...
Anne Shiu
102
Voted
SIAMSC
2008
131views more  SIAMSC 2008»
15 years 11 days ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
102
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ICCMS
2009
118views more  ICCMS 2009»
14 years 10 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi