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108
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RECOMB
2005
Springer
16 years 1 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
RECOMB
2004
Springer
16 years 1 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
173
Voted
RECOMB
2001
Springer
16 years 1 months ago
Finding motifs using random projections
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
Jeremy Buhler, Martin Tompa
102
Voted
STOC
2005
ACM
164views Algorithms» more  STOC 2005»
16 years 1 months ago
Cooperative asynchronous update of shared memory
The Write-All problem for an asynchronous shared-memory system has the objective for the processes to update the contents of a set of shared registers, while minimizing the mber o...
Bogdan S. Chlebus, Dariusz R. Kowalski
VLDB
2006
ACM
171views Database» more  VLDB 2006»
16 years 1 months ago
Grid-partition index: a hybrid method for nearest-neighbor queries in wireless location-based services
Abstract Traditional nearest-neighbor (NN) search is based on two basic indexing approaches: object-based indexing and solution-based indexing. The former is constructed based on t...
Baihua Zheng, Jianliang Xu, Wang-Chien Lee, Dik Lu...
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