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    RECOMB
    2011
    Springer
    264views Computational Biology» more  RECOMB 2011»
    De Novo Discovery of Mutated Driver Pathways in Cancer
    14 years 20 days ago
    De Novo Discovery of Mutated Driver Pathways in Cancer
    Download  cs.brown.edu
    Fabio Vandin, Eli Upfal, Benjamin J. Raphael
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    CONSTRAINTS
    2008
    121views more  CONSTRAINTS 2008»
    Modeling Biological Networks by Action Languages via Answer Set Programming
    14 years 10 months ago
    Modeling Biological Networks by Action Languages via Answer Set Programming
    Download  www.cs.uni-potsdam.de
    We describe an approach to modeling biological networks by action languages via answer set programming. To this end, we propose an action language for modeling biological networks...
    Steve Dworschak, Susanne Grell, Victoria J. Nikifo...
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    ICTAI
    2008
    IEEE
    131views Artificial Intelligence» more  ICTAI 2008»
    The System BioC for Reasoning about Biological Models in Action Language C
    15 years 4 months ago
    The System BioC for Reasoning about Biological Models in Action Language C
    Download  www.cs.uni-potsdam.de
    We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
    Steve Dworschak, Torsten Grote, Arne König, T...
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    ENTCS
    2008
    98views more  ENTCS 2008»
    An Intermediate Language for the Simulation of Biological Systems
    14 years 10 months ago
    An Intermediate Language for the Simulation of Biological Systems
    Download  www.di.unipi.it
    We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be t...
    Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo...
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    ICLP
    2009
    Springer
    173views Automated Reasoning» more  ICLP 2009»
    Constraint Based Languages for Biological Reactions
    15 years 10 months ago
    Constraint Based Languages for Biological Reactions
    Download  www.ing.unife.it
    In this paper, we study the modelization of biochemical reaction by using concurrent constraint programming idioms. In particular we will consider the stochastic concurrent constra...
    Marco Bottalico, Stefano Bistarelli
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