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14 years 11 months ago
An Evaluation of Ontology Exchange Languages for Bioinformatics
Ontologies are specifications of the concepts in a given field, and of the relationships among those concepts. The development of ontologies for molecular-biology information and ...
Robin McEntire, Peter D. Karp, Neil F. Abernethy, ...
PADL
2009
Springer
15 years 10 months ago
Using Bloom Filters for Large Scale Gene Sequence Analysis in Haskell
Analysis of biological data often involves large data sets and computationally expensive algorithms. Databases of biological data continue to grow, leading to an increasing demand ...
Ketil Malde, Bryan O'Sullivan
BMCBI
2008
96views more  BMCBI 2008»
14 years 10 months ago
SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool
Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp
TCSB
2010
14 years 8 months ago
Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan Operon
Transcriptional attenuation at E.coli’s tryptophan operon is a prime example of RNA-mediated gene regulation. In this paper, we present a discrete stochastic model for this pheno...
Céline Kuttler, Cédric Lhoussaine, M...
GECCO
2007
Springer
159views Optimization» more  GECCO 2007»
15 years 4 months ago
A systemic computation platform for the modelling and analysis of processes with natural characteristics
Computation in biology and in conventional computer architectures seem to share some features, yet many of their important characteristics are very different. To address this, [1]...
Erwan Le Martelot, Peter J. Bentley, R. Beau Lotto