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» Computational Challenges of Systems Biology
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ISMB
1998
15 years 1 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
BMCBI
2007
158views more  BMCBI 2007»
14 years 12 months ago
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Background: The joint analysis of several categorical variables is a common task in many areas of biology, and is becoming central to systems biology investigations whose goal is ...
Corinne Dahinden, Giovanni Parmigiani, Mark C. Eme...
IPPS
2009
IEEE
15 years 6 months ago
Accelerating leukocyte tracking using CUDA: A case study in leveraging manycore coprocessors
The availability of easily programmable manycore CPUs and GPUs has motivated investigations into how to best exploit their tremendous computational power for scientific computing...
Michael Boyer, David Tarjan, Scott T. Acton, Kevin...
TCS
2011
14 years 6 months ago
Parameter estimation for Boolean models of biological networks
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Elena S. Dimitrova, Luis David García-Puent...
ICPP
2007
IEEE
15 years 6 months ago
Architectural Challenges in Memory-Intensive, Real-Time Image Forming
The real-time image forming in future, high-end synthetic aperture radar systems is an example of an application that puts new demands on computer architectures. The initial quest...
Anders Ahlander, H. Hellsten, K. Lind, J. Lindgren...