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» Computational Heuristics for Simplifying a Biological Model
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JCC
2006
110views more  JCC 2006»
13 years 6 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs
RECOMB
2005
Springer
14 years 6 months ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
TCSV
2010
13 years 1 months ago
Application-Centric Routing for Video Streaming Over MultiHop Wireless Networks
Abstract--Most existing works on routing for video transmission over multihop wireless networks only focus on how to satisfy the network-oriented quality-of-service (QoS), such as ...
Dalei Wu, Song Ci, Haohong Wang, Aggelos K. Katsag...
BICOB
2009
Springer
14 years 29 days ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
BMCBI
2010
151views more  BMCBI 2010»
13 years 6 months ago
Misty Mountain clustering: application to fast unsupervised flow cytometry gating
Background: There are many important clustering questions in computational biology for which no satisfactory method exists. Automated clustering algorithms, when applied to large,...
István P. Sugár, Stuart C. Sealfon