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» Computational Heuristics for Simplifying a Biological Model
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VIS
2004
IEEE
170views Visualization» more  VIS 2004»
15 years 10 months ago
Guaranteed Quality Triangulation of Molecular Skin Surfaces
We present an efficient algorithm to mesh the macromolecules surface model represented by the skin surface defined by Edelsbrunner. Our algorithm overcomes several challenges resi...
Ho-Lun Cheng, Xinwei Shi
SAC
2009
ACM
15 years 4 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
103
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SI3D
2003
ACM
15 years 2 months ago
Perceptually guided simplification of lit, textured meshes
We present a new algorithm for best-effort simplification of polygonal meshes based on principles of visual perception. Building on previous work, we use a simple model of low-lev...
Nathaniel Williams, David P. Luebke, Jonathan D. C...
ASM
2010
ASM
15 years 4 months ago
Alloy+HotCore: A Fast Approximation to Unsat Core
Identifying a minimal unsatisfiable core in an Alloy model proved to be a very useful feature in many scenarios. We extend this concept to hot core, an approximation to unsat core...
Nicolás D'Ippolito, Marcelo F. Frias, Juan ...
BMCBI
2006
86views more  BMCBI 2006»
14 years 9 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson