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RECOMB
2000
Springer
15 years 8 months ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
PARA
2004
Springer
15 years 9 months ago
A Family of High-Performance Matrix Multiplication Algorithms
During the last half-decade, a number of research efforts have centered around developing software for generating automatically tuned matrix multiplication kernels. These include ...
John A. Gunnels, Fred G. Gustavson, Greg Henry, Ro...
IPPS
2002
IEEE
15 years 9 months ago
A SIMD Vectorizing Compiler for Digital Signal Processing Algorithms
Short vector SIMD instructions on recent microprocessors, such as SSE on Pentium III and 4, speed up code but are a major challenge to software developers. We present a compiler t...
Franz Franchetti, Markus Püschel
174
Voted
CPHYSICS
2010
184views more  CPHYSICS 2010»
15 years 4 months ago
Parallel Newton-Krylov-Schwarz algorithms for the three-dimensional Poisson-Boltzmann equation in numerical simulation of colloi
We investigate fully parallel Newton-Krylov-Schwarz (NKS) algorithms for solving the large sparse nonlinear systems of equations arising from the finite element discretization of ...
Feng-Nan Hwang, Shang-Rong Cai, Yun-Long Shao, Jon...
COCOA
2011
Springer
14 years 4 months ago
Algorithmic Aspects of Heterogeneous Biological Networks Comparison
Biological networks are commonly used to model molecular activity within the cell. Recent experimental studies have shown that the detection of conserved subnetworks across several...
Guillaume Blin, Guillaume Fertin, Hafedh Mohamed-B...