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POPL
2006
ACM
16 years 7 months ago
A hierarchical model of data locality
In POPL 2002, Petrank and Rawitz showed a universal result-finding optimal data placement is not only NP-hard but also impossible to approximate within a constant factor if P = NP...
Chengliang Zhang, Chen Ding, Mitsunori Ogihara, Yu...
RECOMB
2007
Springer
16 years 7 months ago
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation
We present a technique for approximating the free energy of protein structures using Generalized Belief Propagation (GBP). The accuracy and utility of these estimates are then demo...
Hetunandan Kamisetty, Eric P. Xing, Christopher Ja...
200
Voted
RECOMB
2005
Springer
16 years 7 months ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
219
Voted
EDBT
2008
ACM
169views Database» more  EDBT 2008»
16 years 7 months ago
Efficient online top-K retrieval with arbitrary similarity measures
The top-k retrieval problem requires finding k objects most similar to a given query object. Similarities between objects are most often computed as aggregated similarities of the...
Prasad M. Deshpande, Deepak P, Krishna Kummamuru
193
Voted
ICFP
2008
ACM
16 years 7 months ago
A scheduling framework for general-purpose parallel languages
The trend in microprocessor design toward multicore and manycore processors means that future performance gains in software will largely come from harnessing parallelism. To reali...
Matthew Fluet, Mike Rainey, John H. Reppy
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