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RECOMB
2009
Springer
16 years 9 days ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
PEPM
2009
ACM
15 years 8 months ago
Bidirectional data-flow analyses, type-systematically
We show that a wide class of bidirectional data-flow analyses and program optimizations based on them admit declarative descriptions in the form of type systems. The salient feat...
Maria João Frade, Ando Saabas, Tarmo Uustal...
BMCBI
2005
132views more  BMCBI 2005»
14 years 11 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
ACMSE
2008
ACM
15 years 1 months ago
Gnutella: integrating performance and security in fully decentralized P2P models
Peer-To-Peer (P2P) systems have made an enormous impact on the Internet, directly affecting its performance and security. The litigation against P2P file sharing has led some desi...
Rossana Motta, Wickus Nienaber, Jon Jenkins
STOC
1997
ACM
257views Algorithms» more  STOC 1997»
15 years 3 months ago
Practical Loss-Resilient Codes
We present randomized constructions of linear-time encodable and decodable codes that can transmit over lossy channels at rates extremely close to capacity. The encoding and decod...
Michael Luby, Michael Mitzenmacher, Mohammad Amin ...