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CMSB
2004
Springer
15 years 7 months ago
Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
Jasmin Fisher, David Harel, E. Jane Albert Hubbard...
SC
2009
ACM
15 years 8 months ago
Dynamic task scheduling for linear algebra algorithms on distributed-memory multicore systems
This paper presents a dynamic task scheduling approach to executing dense linear algebra algorithms on multicore systems (either shared-memory or distributed-memory). We use a tas...
Fengguang Song, Asim YarKhan, Jack Dongarra
BMCBI
2006
164views more  BMCBI 2006»
15 years 2 months ago
BIOZON: a system for unification, management and analysis of heterogeneous biological data
Integration of heterogeneous data types is a challenging problem, especially in biology, where the number of databases and data types increase rapidly. Amongst the problems that o...
Aaron Birkland, Golan Yona
HYBRID
2004
Springer
15 years 7 months ago
Dynamic Partitioning of Large Discrete Event Biological Systems for Hybrid Simulation and Analysis
Abstract. Biological systems involving genetic reactions are large discrete event systems, and often contain certain species that occur in small quantities, and others that occur i...
Natasha A. Neogi
GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
15 years 3 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...