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» Computer algebra in systems biology
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ISMB
1998
15 years 3 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
TCS
2002
15 years 1 months ago
Process algebra for performance evaluation
This paper surveys the theoretical developments in the field of stochastic process algebras, process algebras where action occurrences may be subject to a delay that is determined...
Holger Hermanns, Ulrich Herzog, Joost-Pieter Katoe...
TCS
2011
14 years 9 months ago
Parameter estimation for Boolean models of biological networks
Boolean networks have long been used as models of molecular networks and play an increasingly important role in systems biology. This paper describes a software package, offered ...
Elena S. Dimitrova, Luis David García-Puent...
JCB
2006
185views more  JCB 2006»
15 years 1 months ago
A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks
Biological systems are traditionally studied by focusing on a specific subsystem, building an intuitive model for it, and refining the model using results from carefully designed ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
ICCS
2007
Springer
15 years 8 months ago
Integration of Biological, Psychological, and Social Aspects in Agent-Based Simulation of a Violent Psychopath
In the analysis of criminal behaviour, a combination of biological, psychological and social aspects may be taken into account. Dynamical modelling methods developed in recent year...
Tibor Bosse, Charlotte Gerritsen, Jan Treur