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» Computing Models for FPGA-Based Accelerators
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DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
15 years 2 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
DATAMINE
2006
166views more  DATAMINE 2006»
14 years 10 months ago
Accelerated EM-based clustering of large data sets
Motivated by the poor performance (linear complexity) of the EM algorithm in clustering large data sets, and inspired by the successful accelerated versions of related algorithms l...
Jakob J. Verbeek, Jan Nunnink, Nikos A. Vlassis
SIPS
2007
IEEE
15 years 4 months ago
Low-Overhead Run-Time Scheduling for Fine-Grained Acceleration of Signal Processing Systems
In this paper, we present four scheduling algorithms that provide flexible utilization of fine-grain DSP accelerators with low run-time overhead. Methods that have originally been...
Jani Boutellier, Shuvra S. Bhattacharyya, Olli Sil...
VLSISP
2010
119views more  VLSISP 2010»
14 years 4 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
PUK
2003
14 years 11 months ago
Accelerating Heuristic Search in Spatial Domains
This paper exploits the spatial representation of state space problem graphs to preprocess and enhance heuristic search engines. It combines classical AI exploration with computati...
Stefan Edelkamp, Shahid Jabbar, Thomas Willhalm