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» Computing Reachable States for Nonlinear Biological Models
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BIB
2010
129views more  BIB 2010»
14 years 11 months ago
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
Peter D. Karp, Suzanne M. Paley, Markus Krummenack...
ENTCS
2002
139views more  ENTCS 2002»
14 years 11 months ago
Automatic Verification of the IEEE-1394 Root Contention Protocol with KRONOS and PRISM
We report on the automatic verification of timed probabilistic properties of the IEEE 1394 root contention protocol combining two existing tools: the real-time modelchecker Kronos...
Conrado Daws, Marta Z. Kwiatkowska, Gethin Norman
IJCAI
2007
15 years 1 months ago
Computational Aspects of Analyzing Social Network Dynamics
Motivated by applications such as the spread of epidemics and the propagation of influence in social networks, we propose a formal model for analyzing the dynamics of such networ...
Christopher L. Barrett, Harry B. Hunt III, Madhav ...
MEMBRANE
2004
Springer
15 years 5 months ago
Evolution and Oscillation in P Systems: Applications to Biological Phenomena
Some computational aspects and behavioral patterns of P systems are considered, emphasizing dynamical properties that turn useful in characterizing the behavior of biological and b...
Vincenzo Manca, Luca Bianco, Federico Fontana
CMSB
2009
Springer
15 years 6 months ago
A Bayesian Approach to Model Checking Biological Systems
Recently, there has been considerable interest in the use of Model Checking for Systems Biology. Unfortunately, the state space of stochastic biological models is often too large f...
Sumit Kumar Jha, Edmund M. Clarke, Christopher Jam...