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BMCBI
2010
153views more  BMCBI 2010»
14 years 11 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
BMCBI
2011
14 years 3 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
14 years 9 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala
NAR
2011
212views Computer Vision» more  NAR 2011»
14 years 2 months ago
The Sequence Read Archive
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data ...
Rasko Leinonen, Hideaki Sugawara, Martin Shumway
UIST
2004
ACM
15 years 5 months ago
SketchREAD: a multi-domain sketch recognition engine
We present SketchREAD, a multi-domain sketch recognition engine capable of recognizing freely hand-drawn diagrammatic sketches. Current computer sketch recognition systems are dif...
Christine Alvarado, Randall Davis