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CIKM
2006
Springer
15 years 1 months ago
Structure-based querying of proteins using wavelets
The ability to retrieve molecules based on structural similarity has use in many applications, from disease diagnosis and treatment to drug discovery and design. In this paper, we...
Keith Marsolo, Srinivasan Parthasarathy, Kotagiri ...
COCO
2006
Springer
93views Algorithms» more  COCO 2006»
15 years 1 months ago
Making Hard Problems Harder
We consider a general approach to the hoary problem of (im)proving circuit lower bounds. We define notions of hardness condensing and hardness extraction, in analogy to the corres...
Joshua Buresh-Oppenheim, Rahul Santhanam
FPGA
2004
ACM
163views FPGA» more  FPGA 2004»
15 years 1 months ago
Time and area efficient pattern matching on FPGAs
Pattern matching for network security and intrusion detection demands exceptionally high performance. Much work has been done in this field, and yet there is still significant roo...
Zachary K. Baker, Viktor K. Prasanna
FPGA
2004
ACM
140views FPGA» more  FPGA 2004»
15 years 1 months ago
Using reconfigurability to achieve real-time profiling for hardware/software codesign
Embedded systems combine a processor with dedicated logic to meet design specifications at a reasonable cost. The attempt to amalgamate two distinct design environments introduces...
Lesley Shannon, Paul Chow
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 1 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
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