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95
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BMCBI
2007
182views more  BMCBI 2007»
15 years 19 days ago
Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
Background: ChIP-chip data, which indicate binding of transcription factors (TFs) to DNA regions in vivo, are widely used to reconstruct transcriptional regulatory networks. Howev...
Wei-Sheng Wu, Wen-Hsiung Li, Bor-Sen Chen
LCTRTS
2007
Springer
15 years 6 months ago
Addressing instruction fetch bottlenecks by using an instruction register file
The Instruction Register File (IRF) is an architectural extension for providing improved access to frequently occurring instructions. An optimizing compiler can exploit an IRF by ...
Stephen Roderick Hines, Gary S. Tyson, David B. Wh...
ISSTA
2000
ACM
15 years 5 months ago
Which pointer analysis should I use?
During the past two decades many di erent pointer analysis algorithms have been published. Although some descriptions include measurements of the e ectiveness of the algorithm, qu...
Michael Hind, Anthony Pioli
103
Voted
BMCBI
2010
117views more  BMCBI 2010»
15 years 22 days ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
95
Voted
BMCBI
2006
111views more  BMCBI 2006»
15 years 20 days ago
Using ESTs to improve the accuracy of de novo gene prediction
Background: ESTs are a tremendous resource for determining the exon-intron structures of genes, but even extensive EST sequencing tends to leave many exons and genes untouched. Ge...
Chaochun Wei, Michael R. Brent