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» Computing persistent homology
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BMCBI
2007
131views more  BMCBI 2007»
14 years 9 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
15 years 10 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
SIGMOD
2007
ACM
166views Database» more  SIGMOD 2007»
15 years 10 months ago
Threats to privacy in the forensic analysis of database systems
The use of any modern computer system leaves unintended traces of expired data and remnants of users' past activities. In this paper, we investigate the unintended persistenc...
Patrick Stahlberg, Gerome Miklau, Brian Neil Levin...
SSD
2005
Springer
145views Database» more  SSD 2005»
15 years 3 months ago
High Performance Multimodal Networks
Networks often form the core of many users’ spatial databases. Networks are used to support the rapid navigation and analysis of linearly connected data such as that found in tra...
Erik G. Hoel, Wee-Liang Heng, Dale Honeycutt
HOTOS
2003
IEEE
15 years 3 months ago
Palimpsest: Soft-Capacity Storage for Planetary-Scale Services
Distributed writable storage systems typically provide NFS-like semantics and unbounded persistence for files. We claim that for planetary-scale distributed services such facilit...
Timothy Roscoe, Steven Hand