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» Computing recombination networks from binary sequences
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DAWAK
2004
Springer
15 years 3 months ago
Mining Periodic Patterns in Sequence Data
Abstract. Periodic pattern mining is the problem that regards temporal regularity. There are many emerging applications in periodic pattern mining, including web usage recommendati...
Kuo-Yu Huang, Chia-Hui Chang
PR
2011
14 years 4 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
BMCBI
2008
121views more  BMCBI 2008»
14 years 10 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
EMO
2009
Springer
140views Optimization» more  EMO 2009»
15 years 2 months ago
On Using Populations of Sets in Multiobjective Optimization
Abstract. Most existing evolutionary approaches to multiobjective optimization aim at finding an appropriate set of compromise solutions, ideally a subset of the Pareto-optimal se...
Johannes Bader, Dimo Brockhoff, Samuel Welten, Eck...
BMCBI
2008
135views more  BMCBI 2008»
14 years 10 months ago
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
Background: In the adaptive immune system, variable regions of immunoglobulin (IG) are encoded by random recombination of variable (V), diversity (D), and joining (J) gene segment...
Xiaojing Wang, Di Wu, SiYuan Zheng, Jing Sun, Lin ...