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BMCBI
2006
113views more  BMCBI 2006»
14 years 9 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
14 years 9 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
PAM
2010
Springer
15 years 4 months ago
Toward Topology Dualism: Improving the Accuracy of AS Annotations for Routers
Abstract. To describe, analyze, and model the topological and structural characteristics of the Internet, researchers use Internet maps constructed at the router or autonomous syst...
Bradley Huffaker, Amogh Dhamdhere, Marina Fomenkov...
ICCSA
2003
Springer
15 years 2 months ago
Parallel CLUSTAL W for PC Clusters
This paper presents a parallel version of CLUSTAL W, called pCLUSTAL. In contrast to the commercial SGI parallel Clustal, which requires an expensive shared memory SGI multiprocess...
James Cheetham, Frank K. H. A. Dehne, Sylvain Pitr...
SC
1995
ACM
15 years 1 months ago
Parallel Implementations of the Power System Transient Stability Problem on Clusters of Workstations
Power system transient stability analysis computes the response of the rapidly changing electrical components of a power system to a sequence of large disturbances followed by ope...
Monika ten Bruggencate, Suresh Chalasani