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ALGORITHMICA
1999
99views more  ALGORITHMICA 1999»
13 years 5 months ago
Evolutionary Trees and Ordinal Assertions
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Paul E. Kearney, Ryan Hayward, Henk Meijer
CCCG
2008
13 years 7 months ago
Computing the Stretch Factor of Paths, Trees, and Cycles in Weighted Fixed Orientation Metrics
Let G be a graph embedded in the L1-plane. The stretch factor of G is the maximum over all pairs of distinct vertices p and q of G of the ratio LG 1 (p, q)/L1(p, q), where LG 1 (p...
Christian Wulff-Nilsen
RECOMB
2006
Springer
14 years 6 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
TALG
2008
131views more  TALG 2008»
13 years 6 months ago
Kinetic and dynamic data structures for closest pair and all nearest neighbors
We present simple, fully dynamic and kinetic data structures, which are variants of a dynamic two-dimensional range tree, for maintaining the closest pair and all nearest neighbors...
Pankaj K. Agarwal, Haim Kaplan, Micha Sharir