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BMCBI
2011
14 years 1 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
68
Voted
IPPS
2010
IEEE
14 years 6 months ago
Prototype for a large-scale static timing analyzer running on an IBM Blue Gene
This paper focuses on parallelization of the classic static timing analysis (STA) algorithm for verifying timing characteristics of digital integrated circuits. Given ever-increasi...
Akintayo Holder, Christopher D. Carothers, Kerim K...
ANSS
2007
IEEE
15 years 4 months ago
Evaluating the Design of Biological Cells Using a Computer Workbench
For embedded systems as well as for biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can ...
Tessa E. Pronk, Simon Polstra, Andy D. Pimentel, T...
BMCBI
2006
158views more  BMCBI 2006»
14 years 9 months ago
Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
Background: Multicategory Support Vector Machines (MC-SVM) are powerful classification systems with excellent performance in a variety of data classification problems. Since the p...
Chaoyang Zhang, Peng Li, Arun Rajendran, Youping D...
STOC
2001
ACM
115views Algorithms» more  STOC 2001»
15 years 10 months ago
Running time and program size for self-assembled squares
Recently Rothemund and Winfree 6] have considered the program size complexity of constructing squares by selfassembly. Here, we consider the time complexity of such constructions ...
Leonard M. Adleman, Qi Cheng, Ashish Goel, Ming-De...