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» Computing with Evolving Proteins
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JCB
2006
107views more  JCB 2006»
14 years 10 months ago
Protein Image Alignment via Piecewise Affine Transformations
Abstract We present a new approach for aligning families of 2D gels. Instead of choosing one of the gels as reference and performing pairwise alignment, we construct an ideal gel t...
Florian A. Potra, Xing Liu, Françoise Seill...
BMCBI
2005
113views more  BMCBI 2005»
14 years 10 months ago
Alternative splicing and protein function
Background: Alternative splicing is a major mechanism of generating protein diversity in higher eukaryotes. Although at least half, and probably more, of mammalian genes are alter...
A. D. Neverov, Irena I. Artamonova, Ramil N. Nurtd...
NAR
2011
256views Computer Vision» more  NAR 2011»
14 years 28 days ago
ModBase, a database of annotated comparative protein structure models, and associated resources
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that rel...
Ursula Pieper, Benjamin M. Webb, David T. Barkan, ...
PRICAI
2004
Springer
15 years 3 months ago
Prediction of the Risk Types of Human Papillomaviruses by Support Vector Machines
Abstract. Infection by high-risk human papillomaviruses (HPVs) is associated with the development of cervical cancers. Classification of risk types is important to understand the ...
Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang
SODA
2004
ACM
111views Algorithms» more  SODA 2004»
14 years 11 months ago
Almost-Delaunay simplices: nearest neighbor relations for imprecise points
Delaunay tessellations and Voronoi diagrams capture proximity relationships among sets of points in any dimension. When point coordinates are not known exactly, as in the case of ...
Deepak Bandyopadhyay, Jack Snoeyink