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» Computing with Evolving Proteins
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ICPR
2008
IEEE
16 years 2 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
IEEEPACT
2005
IEEE
15 years 7 months ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley
IPPS
2003
IEEE
15 years 7 months ago
PROSIDIS: A Special Purpose Processor for PROtein SImilarity DIScovery
This work presents the architecture of PROSIDIS, a special purpose processor designed to search for the occurrence of substrings similar to a given ‘template string’ within a ...
Alessandro Marongiu, Paolo Palazzari, Vittorio Ros...
94
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ISMB
1994
15 years 3 months ago
Inductive Logic Programming Used to Discover Topological Constraints in Protein Structures
Thispaperdescribesthe applicationof the Inductive Logic Programming0LP) program GOLEMto the discoveryof constraintsin the packingof beta-sheets in alpha/betaproteins. Theseconstra...
Ross D. King, Dominic A. Clark, Jack Shirazi, Mich...
BMCBI
2007
63views more  BMCBI 2007»
15 years 1 months ago
Prediction of the burial status of transmembrane residues of helical membrane proteins
Background: Helical membrane proteins (HMPs) play a crucial role in diverse cellular processes, yet it still remains extremely difficult to determine their structures by experimen...
Yungki Park, Sikander Hayat, Volkhard Helms