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» Computing with Evolving Proteins
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ISBI
2008
IEEE
15 years 10 months ago
Integrated profiling of cell surface protein and nuclear marker for discriminant analysis
Cell membrane proteins play an important role in tissue architecture and cell-cell communication. We hypothesize that segmentation and multivariate characterization of the distrib...
Ju Han, Hang Chang, Kumari L. Andarawewa, Paul Yas...
ICPR
2004
IEEE
15 years 11 months ago
Relaxation Labeling Processes for Protein Secondary Structure Prediction
The prediction of protein secondary structure is a classical problem in bioinformatics, and in the past few years several machine learning techniques have been proposed to t. From...
Giacomo Colle, Marcello Pelillo
CLUSTER
2007
IEEE
15 years 4 months ago
Sequential and parallel implementation of a constraint-based algorithm for searching protein structures
— Data mining in biological structure libraries can be a powerful tool to better understand biochemical processes. This article introduces the LISA algorithm which enables the re...
Sascha Hunold, Thomas Rauber, Georg Wille
CSB
2005
IEEE
124views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins
As the first step toward a multi-scale, hierarchical computational approach for membrane protein structure prediction, the packing of transmembrane helices was modeled at the resi...
Zhong Chen, Ying Xu
WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...