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» Computing with Evolving Proteins
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CSB
2005
IEEE
142views Bioinformatics» more  CSB 2005»
15 years 3 months ago
BioMap: Discovering Schema Mapping Using Ontologies
Biologists currently devote significant time and effort searching information for their research. The wide diversity in terminology used inhibit effective computerized and manual...
Zoé Lacroix, Sumedha Gholba, Hervé M...
EVOW
2010
Springer
15 years 1 months ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori
BMCBI
2008
154views more  BMCBI 2008»
14 years 10 months ago
Sequence based residue depth prediction using evolutionary information and predicted secondary structure
Background: Residue depth allows determining how deeply a given residue is buried, in contrast to the solvent accessibility that differentiates between buried and solvent-exposed ...
Hua Zhang, Tuo Zhang, Ke Chen 0003, Shiyi Shen, Ji...
89
Voted
NAR
2011
235views Computer Vision» more  NAR 2011»
14 years 1 months ago
P2CS: a database of prokaryotic two-component systems
P2CS (http://www.p2cs.org) is a specialized database for prokaryotic two-component systems (TCSs), virtually ubiquitous signalling proteins which regulate a wide range of physiolo...
Mohamed Barakat, Philippe Ortet, David E. Whitwort...
CIBB
2008
15 years 4 days ago
Analysis of Kernel Based Protein Classification Strategies Using Pairwise Sequence Alignment Measures
Abstract. We evaluated methods of protein classification that use kernels built from BLAST output parameters. Protein sequences were represented as vectors of parameters (e.g. simi...
Dino Franklin, Somdutta Dhir, Sándor Pongor