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» Computing with Evolving Proteins
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TIT
2010
170views Education» more  TIT 2010»
14 years 5 months ago
Belief propagation estimation of protein and domain interactions using the sum-product algorithm
We present a novel framework to estimate protein-protein (PPI) and domain-domain (DDI) interactions based on a belief propagation estimation method that efficiently computes inter...
Faruck Morcos, Marcin Sikora, Mark S. Alber, Dale ...
WABI
2009
Springer
130views Bioinformatics» more  WABI 2009»
15 years 4 months ago
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions
It becomes more and more important to search for similar structures from molecular 3-D structure databases in the structural biology of the post genomic era. Two molecules are said...
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane
MCS
2010
Springer
15 years 3 months ago
An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction
Abstract. The computational genome-wide annotation of gene functions requires the prediction of hierarchically structured functional classes and can be formalized as a multiclass, ...
Matteo Re, Giorgio Valentini
DATESO
2007
157views Database» more  DATESO 2007»
14 years 11 months ago
Index-Based Approach to Similarity Search in Protein and Nucleotide Databases
When searching databases of nucleotide or protein sequences, finding a local alignment of two sequences is one of the main tasks. Since the sizes of available databases grow const...
David Hoksza, Tomás Skopal
BIOCOMP
2006
14 years 11 months ago
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM
- Many proteins contain a signal sequence at their COOH-terminus recognized by glycosylphosphatidylinositol (GPI) anchor and attached on the membrane. Experimental result suggests ...
Wei Cao, Kazuya Sumikoshi, Tohru Terada, Shugo Nak...