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» Computing with Evolving Proteins
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CG
2002
Springer
14 years 10 months ago
A stochastic cellular automaton for three-coloring penrose tiles
We present a three state, stochastic cellular automaton that runs on Penrose tilings and seems to evolve to a three-colored equilibrium.
Mark McClure
ICASSP
2007
IEEE
15 years 4 months ago
Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
Zafer Aydin, Hakan Erdogan, Yucel Altunbasak
BMCBI
2007
153views more  BMCBI 2007»
14 years 10 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
JCB
2008
106views more  JCB 2008»
14 years 10 months ago
Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment
Quantification of statistical significance is essential for the interpretation of protein structural similarity. To address this, a random model for protein structure comparison w...
James O. Wrabl, Nick V. Grishin
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
14 years 8 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...