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» Computing with Evolving Proteins
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BMCBI
2010
112views more  BMCBI 2010»
14 years 10 months ago
Computational identification of rare codons of Escherichia coli based on codon pairs preference
Background: Codon bias is believed to play an important role in the control of gene expression. In Escherichia coli, some rare codons, which can limit the expression level of exog...
Xianming Wu, Songfeng Wu, Dong Li, Jiyang Zhang, L...
ICCS
2007
Springer
15 years 2 months ago
An Efficient Characteristic Method for the Magnetic Induction Equation with Various Resistivity Scales
In this paper, we develop an efficient characteristic finite element method (FEM) for solving the magnetic induction equation in magnetohydrodynamics (MHD). We carry out numerical ...
Jiangguo (James) Liu
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
15 years 5 months ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
BMCBI
2008
87views more  BMCBI 2008»
14 years 10 months ago
Identification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information
Background: As the number of non-synonymous single nucleotide polymorphisms (nsSNPs), also known as single amino acid polymorphisms (SAPs), increases rapidly, computational method...
Jing Hu, Changhui Yan
BMCBI
2007
95views more  BMCBI 2007»
14 years 10 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao