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» Computing with Evolving Proteins
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RECOMB
2005
Springer
15 years 11 months ago
RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem
We develop an iterative relaxation algorithm, called RIBRA, for NMR protein backbone assignment. RIBRA applies nearest neighbor and weighted maximum independent set algorithms to ...
Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon ...
CIBCB
2007
IEEE
15 years 5 months ago
Spectral Decomposition of Signaling Networks
—Many dynamical processes can be represented as directed attributed graphs or Petri nets where relationships between various entities are explicitly expressed. Signaling networks...
Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merri...
LSGRID
2004
Springer
15 years 4 months ago
Heterogeneous Database Federation Using Grid Technology for Drug Discovery Process
The rapid progress of biotechnology provides an increasing number of life science databases. These databases have been operated and managed individually on the Internet. Under such...
Yukako Tohsato, Takahiro Kosaka, Susumu Date, Shin...
CIBCB
2005
IEEE
15 years 22 days ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
ISMB
1997
15 years 3 days ago
Adding Semantics to Genome Databases: Towards an Ontology for Molecular Biology
Molecular biology has a communicationproblem. There are manydatabases using their ownlabels and categories for storing data objects and someusing identical labels andcategories bu...
Steffen Schulze-Kremer