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» Computing with Evolving Proteins
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NAR
2011
233views Computer Vision» more  NAR 2011»
14 years 1 months ago
ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures
ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms....
Volker Herzig, David L. A. Wood, Felicity Newell, ...
GECCO
2008
Springer
163views Optimization» more  GECCO 2008»
14 years 12 months ago
A differential evolution algorithm for optimizing signal compression and reconstruction transforms
State-of-the-art image compression and reconstruction techniques utilize wavelets. Beginning in 2004, however, a team of researchers at Wright-Patterson Air Force Base (WPAFB), the...
Frank W. Moore, Brendan J. Babb
BIBE
2007
IEEE
108views Bioinformatics» more  BIBE 2007»
15 years 5 months ago
On the Design of Oligos for Gene Synthesis
— Methods for reliable synthesis of long genes offer great promise for protein synthesis via expression of synthetic genes, with applications to improved analysis of protein stru...
Chris Thachuk, Anne Condon
APBC
2007
110views Bioinformatics» more  APBC 2007»
15 years 9 days ago
Fast Structural Similarity Search Based on Topology String Matching
ibe an abstract data model of protein structures by representing the geometry of proteins using spatial data types and present a framework for fast structural similarity search bas...
Sung-Hee Park, David Gilbert, Keun Ho Ryu
METMBS
2004
140views Mathematics» more  METMBS 2004»
15 years 7 days ago
New Techniques for Generation and Analysis of Evolutionary Trees
We introduce new distance measures for the construction and analysis of phylogenies, focusing on thioredoxin-fold proteins. Our distance measures for tree construction are based o...
Chang Wang, Stephen D. Scott, Qingping Tao, Dmitri...