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» Computing with Evolving Proteins
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CEC
2003
IEEE
15 years 4 months ago
A note on general adaptation in populations of painting robots
A population of virtual robots is evolved to perform the task of competitively painting the floor of a toroidal room. Two robots are present in any given room and paint using dis...
Dan Ashlock, Elizabeth Blankenship, Jonathan Gandr...
133
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CCECE
2006
IEEE
15 years 5 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
IPPS
2006
IEEE
15 years 5 months ago
On-chip and on-line self-reconfigurable adaptable platform: the non-uniform cellular automata case
In spite of the high parallelism exhibited by cellular automata architectures, most implementations are usually run in software. For increasing execution parallelism, hardware imp...
Andres Upegui, Eduardo Sanchez
RECOMB
1998
Springer
15 years 3 months ago
The hierarchical organization of molecular structure computations
The task of computing molecular structure from combinations of experimental and theoretical constraints is expensive because of the large number of estimated parameters (the 3D co...
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altma...
124
Voted
HIPC
2009
Springer
14 years 8 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...