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» Computing with Evolving Proteins
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TCBB
2011
14 years 6 months ago
Semi-Markov Models for Brownian Dynamics Permeation in Biological Ion Channels
—Constructing accurate computational models that explain how ions permeate through a biological ion channel is an important problem in biophysics and drug design. Brownian dynami...
Vikram Krishnamurthy, Kai Yiu Luk
HPDC
2012
IEEE
13 years 1 months ago
Work stealing and persistence-based load balancers for iterative overdecomposed applications
Applications often involve iterative execution of identical or slowly evolving calculations. Such applications require incremental rebalancing to improve load balance across itera...
Jonathan Lifflander, Sriram Krishnamoorthy, Laxmik...
80
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CISS
2008
IEEE
15 years 5 months ago
Frames in bioimaging
We survey our work on adaptive multiresolution (MR) approaches to the classification of biological images. The system adds MR decomposition in front of a generic classifier cons...
Amina Chebira, Jelena Kovacevic
ICDM
2008
IEEE
136views Data Mining» more  ICDM 2008»
15 years 5 months ago
Generalized Framework for Syntax-Based Relation Mining
Supervised approaches to Data Mining are particularly appealing as they allow for the extraction of complex relations from data objects. In order to facilitate their application i...
Bonaventura Coppola, Alessandro Moschitti, Daniele...
DEXA
2007
Springer
150views Database» more  DEXA 2007»
15 years 5 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi