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» Computing with Evolving Proteins
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NAR
2007
152views more  NAR 2007»
14 years 10 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
ENTCS
2010
118views more  ENTCS 2010»
14 years 8 months ago
Fragments-based Model Reduction: Some Case Studies
Molecular biological models usually suffer from a dramatic combinatorial blow up. Indeed, proteins form complexes and can modify each others, which leads to the formation of a hug...
Jérôme Feret
NAR
2011
191views Computer Vision» more  NAR 2011»
14 years 1 months ago
ConsensusPathDB: toward a more complete picture of cell biology
ConsensusPathDB is a meta-database that integrates different types of functional interactions from heterogeneous interaction data resources. Physical protein interactions, metabol...
Atanas Kamburov, Konstantin Pentchev, Hanna Galick...
ICMENS
2003
IEEE
80views Hardware» more  ICMENS 2003»
15 years 4 months ago
Molecular Dynamics Calculations of the Electrostatic Properties of Tubulin and Their Consequences for Microtubules
crystallographic results were made available through the Protein Data Bank (PDB) (entries: ITUB and IJFF) which allowed us to view the 3D atomic resolution structure oftubulin. (se...
J. A. Tuszynski, E. J. Carpenter, E. Crawford, J. ...
COMPLIFE
2006
Springer
15 years 2 months ago
Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level
Background: The computer-assisted detection of small molecules by mass spectrometry in biological samples provides a snapshot of thousands of peptides, protein fragments and prote...
Tim O. F. Conrad, Alexander Leichtle, Andre Hageh&...