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» Computing with Evolving Proteins
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NAR
2011
191views Computer Vision» more  NAR 2011»
14 years 15 days ago
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple cr
The protein common interface database (ProtCID) is a database that contains clusters of similar homodimeric and heterodimeric interfaces observed in multiple crystal forms (CFs). ...
Qifang Xu, Roland L. Dunbrack Jr.
PCI
2005
Springer
15 years 3 months ago
Protein Classification with Multiple Algorithms
Nowadays, the number of protein sequences being stored in central protein databases from labs all over the world is constantly increasing. From these proteins only a fraction has b...
Sotiris Diplaris, Grigorios Tsoumakas, Pericles A....
ISMB
1994
14 years 11 months ago
Protein Design by Optimization of a Sequence-Structure Quality Function
Anautomatedprocedurefor protein designbyoptimization of a sequence-structurequalityhasbeendeveloped. Themethodselectsa statistically optimalsequencefor a particularstructure,onthe...
Steven E. Brenner, Alan Berry
84
Voted
CIBCB
2005
IEEE
15 years 3 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang
78
Voted
BMCBI
2010
138views more  BMCBI 2010»
14 years 9 months ago
Amino acid classification based spectrum kernel fusion for protein subnuclear localization
Background: Prediction of protein localization in subnuclear organelles is more challenging than general protein subcelluar localization. There are only three computational models...
Suyu Mei, Wang Fei