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» Computing with Evolving Proteins
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WS
2010
ACM
14 years 8 months ago
Structured literature image finder: Parsing text and figures in biomedical literature
The SLIF project combines text-mining and image processing to extract structured information from biomedical literature. SLIF extracts images and their captions from published pap...
Amr Ahmed, Andrew Arnold, Luís Pedro Coelho...
NAACL
2010
14 years 8 months ago
Joint Inference for Knowledge Extraction from Biomedical Literature
Knowledge extraction from online repositories such as PubMed holds the promise of dramatically speeding up biomedical research and drug design. After initially focusing on recogni...
Hoifung Poon, Lucy Vanderwende
RECOMB
2012
Springer
13 years 19 days ago
Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem
Signaling networks are essential for cells to control processes such as growth and response to stimuli. Although many “omic” data sources are available to probe signaling pathw...
Nurcan Tuncbag, Alfredo Braunstein, Andrea Pagnani...
RECOMB
2012
Springer
13 years 19 days ago
Reconstructing Boolean Models of Signaling
Abstract. Since the first emergence of protein-protein interaction networks, more than a decade ago, they have been viewed as static scaffolds of the signaling-regulatory events ...
Roded Sharan, Richard M. Karp
ICSE
2009
IEEE-ACM
15 years 11 months ago
Reasoning about edits to feature models
Features express the variabilities and commonalities among programs in a software product line (SPL). A feature model defines the valid combinations of features, where each combin...
Christian Kästner, Don S. Batory, Thomas Th&u...