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» Computing with Evolving Proteins
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RECOMB
2004
Springer
15 years 10 months ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
PPSN
1998
Springer
15 years 1 months ago
Mechanisms of Emergent Computation in Cellular Automata
Abstract. We introduce a class of embedded-particle models for describing the emergent computational strategies observed in cellular automata (CAs) that were evolved for performing...
Wim Hordijk, James P. Crutchfield, Melanie Mitchel...
BMCBI
2007
97views more  BMCBI 2007»
14 years 9 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
BMCBI
2007
96views more  BMCBI 2007»
14 years 9 months ago
Protein subcellular localization prediction based on compartment-specific features and structure conservation
Motivation: Protein subcellular localization is crucial for genome annotation, protein function prediction, and drug discovery. However, since determining subcellular localization...
Emily Chia-Yu Su, Hua-Sheng Chiu, Allan Lo, Jenn-K...
COMPLIFE
2005
Springer
15 years 3 months ago
The Architecture of a Proteomic Network in the Yeast
Abstract. We describe an approach to clustering the yeast protein-protein interaction network in order to identify functional modules, groups of proteins forming multi-protein comp...
Emad Ramadan, Christopher Osgood, Alex Pothen