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ALGORITHMICA
2007
70views more  ALGORITHMICA 2007»
14 years 9 months ago
Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins
This paper proposes the Protein Ensemble Method (PEM) to model equilibrium fluctuations in proteins where fragments of the protein polypeptide chain can move independently of one ...
Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki
NAR
2008
122views more  NAR 2008»
14 years 9 months ago
SIMAP - structuring the network of protein similarities
Protein sequences are the most important source of evolutionary and functional information for new proteins. In order to facilitate the computationally intensive tasks of sequence...
Thomas Rattei, Patrick Tischler, Roland Arnold, Fr...
DNA
2006
Springer
130views Bioinformatics» more  DNA 2006»
14 years 11 months ago
Displacement Whiplash PCR: Optimized Architecture and Experimental Validation
Whiplash PCR-based methods of biomolecular computation (BMC), while highly-versatile in principle, are well-known to suffer from a simple but serious form of self-poisoning known a...
John A. Rose, Ken Komiya, Satsuki Yaegashi, Masami...
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 17 days ago
PHOSIDA 2011: the posttranslational modification database
The primary purpose of PHOSIDA (http://www .phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report...
Florian Gnad, Jeremy Gunawardena, Matthias Mann 00...
RECOMB
2005
Springer
15 years 10 months ago
Comparison of Protein-Protein Interaction Confidence Assignment Schemes
Recent technological advances have enabled high-throughput measurements of protein-protein interactions in the cell, producing protein interaction networks for various species at a...
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded S...