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» Computing with Evolving Proteins
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BMCBI
2005
136views more  BMCBI 2005»
14 years 9 months ago
Automatic detection of false annotations via binary property clustering
Background: Computational protein annotation methods occasionally introduce errors. Falsepositive (FP) errors are annotations that are mistakenly associated with a protein. Such f...
Noam Kaplan, Michal Linial
GPEM
2002
134views more  GPEM 2002»
14 years 9 months ago
Genetic Programming and Autoconstructive Evolution with the Push Programming Language
Push is a programming language designed for the expression of evolving programs within an evolutionary computation system. This article describes Push and illustrates some of the o...
Lee Spector, Alan J. Robinson
NAR
2011
274views Computer Vision» more  NAR 2011»
14 years 4 months ago
A series of PDB related databases for everyday needs
The Protein Data Bank (PDB) is the world-wide repository of macromolecular structure information. We present a series of databases that run parallel to the PDB. Each database hold...
Robbie P. Joosten, Tim A. H. te Beek, Elmar Kriege...
GECCO
2008
Springer
164views Optimization» more  GECCO 2008»
14 years 10 months ago
Genetic algorithms with local search optimization for protein structure prediction problem
This paper presents a new Genetic Algorithm for Protein Structure Prediction problem in both 2D and 3D hydrophobichydrophilic lattice models, introduced in [1]. Our algorithm evol...
Igor Berenboym, Mireille Avigal
BMCBI
2007
151views more  BMCBI 2007»
14 years 9 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...